3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03737

Details:

PFam ID : PF03737

PFam Domain Description : Demethylmenaquinone methyltransferase

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 1156

Average sequence length: 154.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03737	C3YGJ0_BRAFL_47_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03737	B7G6J4_PHATC_18_200	100

Sequence based PCA Plot of the family - PF03737 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=26
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay