3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03736

Details:

PFam ID : PF03736

PFam Domain Description : EPTP domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 185

Average sequence length: 45.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03736	C3YGJ0_BRAFL_47_100	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03736	Q11BY4_MESSB_180_222	92.9

Sequence based PCA Plot of the family - PF03736 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay