3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03734

Details:

PFam ID : PF03734

PFam Domain Description : L,D-transpeptidase catalytic domain

Number of Sequence in 50% Dataset : 379

Number of Sequence in Full Dataset : 3418

Average sequence length: 140.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03734	E7MNR1_9FIRM_122_344	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03734	B4S353_PROA2_3_91	96.3

Sequence based PCA Plot of the family - PF03734 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=37 Length=8
Motif3 Start=77 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay