3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03733

Details:

PFam ID : PF03733

PFam Domain Description : Domain of unknown function (DUF307)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 616

Average sequence length: 52.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03733	O65226_ARATH_97_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03733	B6W252_9BACE_1_37	100

Sequence based PCA Plot of the family - PF03733 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=20
Motif2 Start=29 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay