3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03731

Details:

PFam ID : PF03731

PFam Domain Description : Ku70/Ku80 N-terminal alpha/beta domain

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 300

Average sequence length: 205.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03731	E5S7A1_TRISP_264_332	67.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03731	C5DGE9_LACTC_5_224	99.3

Sequence based PCA Plot of the family - PF03731 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=39

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay