3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03730

Details:

PFam ID : PF03730

PFam Domain Description : Ku70/Ku80 C-terminal arm

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 178

Average sequence length: 91.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03730	A4VEG9_TETTH_474_602	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03730	F2QWR2_PICPA_453_553	96.0

Sequence based PCA Plot of the family - PF03730 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay