3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03725

Details:

PFam ID : PF03725

PFam Domain Description : 3' exoribonuclease family, domain 2

Number of Sequence in 50% Dataset : 125

Number of Sequence in Full Dataset : 2688

Average sequence length: 68.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03725	E6ZT22_9BASI_199_292	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03725	B7P1B4_IXOSC_65_131	63

Sequence based PCA Plot of the family - PF03725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay