3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03724

Details:

PFam ID : PF03724

PFam Domain Description : META domain

Number of Sequence in 50% Dataset : 380

Number of Sequence in Full Dataset : 768

Average sequence length: 100.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03724	A0YNG6_LYNSP_2_67	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03724	Q4D7X7_TRYCR_5_66	99.7

Sequence based PCA Plot of the family - PF03724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay