3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03722

Details:

PFam ID : PF03722

PFam Domain Description : Hemocyanin, all-alpha domain

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 429

Average sequence length: 114.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03722	A4SAA1_OSTLU_11_168	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03722	C4PWQ0_9HEXA_24_150	100

Sequence based PCA Plot of the family - PF03722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=18
Motif2 Start=119 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay