3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03721

Details:

PFam ID : PF03721

PFam Domain Description : UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 2518

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03721	A4SAA1_OSTLU_11_168	66.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03721	E4M3P9_9FIRM_1_122	100

Sequence based PCA Plot of the family - PF03721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=11
Motif2 Start=162 Length=14
Motif3 Start=125 Length=20
Motif4 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay