3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03720

Details:

PFam ID : PF03720

PFam Domain Description : UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 2473

Average sequence length: 99.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03720	E6RZI9_CAMJC_315_357	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03720	Q5CIZ9_CRYHO_336_475	100

Sequence based PCA Plot of the family - PF03720 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=157 Length=14
Motif2 Start=3 Length=17
Motif3 Start=110 Length=11
Motif4 Start=189 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay