3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03716

Details:

PFam ID : PF03716

PFam Domain Description : WCCH motif

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 163

Average sequence length: 24.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03716	Q9HFY8_COLGL_704_728	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03716	Q58WH4_9GEMI_26_46	96.2

Sequence based PCA Plot of the family - PF03716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay