3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03715

Details:

PFam ID : PF03715

PFam Domain Description : Noc2p family

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 170

Average sequence length: 271.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03715	E1EYN0_GIAIA_279_591	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03715	Q5KCK3_CRYNE_406_724	100

Sequence based PCA Plot of the family - PF03715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=6 Length=8
Motif2 Start=54 Length=8
Motif3 Start=79 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay