3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03713

Details:

PFam ID : PF03713

PFam Domain Description : Domain of unknown function (DUF305)

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 710

Average sequence length: 124.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03713	A6GE17_9DELT_284_454	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03713	C8XI99_NAKMY_41_235	100

Sequence based PCA Plot of the family - PF03713 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=158 Length=8
Motif2 Start=110 Length=8
Motif3 Start=43 Length=11
Motif4 Start=8 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay