3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03712

Details:

PFam ID : PF03712

PFam Domain Description : Copper type II ascorbate-dependent monooxygenase, C-terminal domain

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 265

Average sequence length: 147.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03712	A6GE17_9DELT_284_454	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03712	A6GE17_9DELT_284_454	100

Sequence based PCA Plot of the family - PF03712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8
Motif4 Start=134 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay