3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03711

Details:

PFam ID : PF03711

PFam Domain Description : Orn/Lys/Arg decarboxylase, C-terminal domain

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 835

Average sequence length: 104.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03711	D3QFX7_STALH_4_106	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03711	E3VNN3_9LACO_371_443	100

Sequence based PCA Plot of the family - PF03711 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=83 Length=17
Motif3 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay