3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03710

Details:

PFam ID : PF03710

PFam Domain Description : Glutamate-ammonia ligase adenylyltransferase

Number of Sequence in 50% Dataset : 136

Number of Sequence in Full Dataset : 1180

Average sequence length: 237.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03710	D3QFX7_STALH_4_106	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03710	E6LYX1_9ACTO_596_884	100

Sequence based PCA Plot of the family - PF03710 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=8
Motif2 Start=62 Length=17
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay