3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03709

Details:

PFam ID : PF03709

PFam Domain Description : Orn/Lys/Arg decarboxylase, N-terminal domain

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 249

Average sequence length: 109.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03709	D3QFX7_STALH_4_106	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03709	Q47IJ6_DECAR_19_141	100

Sequence based PCA Plot of the family - PF03709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=109 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay