3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03708 Details: PFam ID : PF03708 PFam Domain Description : Avian retrovirus envelope protein, gp85 Number of Sequence in 50% Dataset : 6 Number of Sequence in Full Dataset : 33 Average sequence length: 213.1 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF03708C1JDT2_ALV_159_22460 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF03708Q9YTU4_9RETR_1_17790.6 Sequence based PCA Plot of the family - PF03708 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 2 motifsMotif1 Start=1 Length=27Motif2 Start=34 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF03708
PFam Domain Description : Avian retrovirus envelope protein, gp85
Number of Sequence in 50% Dataset : 6
Number of Sequence in Full Dataset : 33
Average sequence length: 213.1
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER