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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03708
Details:

PFam ID : PF03708

PFam Domain Description : Avian retrovirus envelope protein, gp85

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 33

Average sequence length: 213.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03708C1JDT2_ALV_159_22460
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03708Q9YTU4_9RETR_1_17790.6
Sequence based PCA Plot of the family - PF03708 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=34 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay