3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03706

Details:

PFam ID : PF03706

PFam Domain Description : Uncharacterised protein family (UPF0104)

Number of Sequence in 50% Dataset : 799

Number of Sequence in Full Dataset : 1743

Average sequence length: 288.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03706	A3CUG6_METMJ_413_503	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03706	D5WVU8_BACT2_26_388	99.7

Sequence based PCA Plot of the family - PF03706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=77 Length=8
Motif4 Start=303 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay