3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03705

Details:

PFam ID : PF03705

PFam Domain Description : CheR methyltransferase, all-alpha domain

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 1206

Average sequence length: 56.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03705	A3CUG6_METMJ_413_503	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03705	B1I5I9_DESAP_1_63	99.9

Sequence based PCA Plot of the family - PF03705 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=11
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay