3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03703

Details:

PFam ID : PF03703

PFam Domain Description : Bacterial PH domain

Number of Sequence in 50% Dataset : 419

Number of Sequence in Full Dataset : 1531

Average sequence length: 80.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03703	A3CUG6_METMJ_413_503	78.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03703	A8GVE8_RICB8_55_135	99.5

Sequence based PCA Plot of the family - PF03703 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay