3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03702

Details:

PFam ID : PF03702

PFam Domain Description : Uncharacterised protein family (UPF0075)

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 676

Average sequence length: 351.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03702	Q32LT0_DANRE_2_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03702	D2VDZ8_NAEGR_6_431	100

Sequence based PCA Plot of the family - PF03702 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=191 Length=8
Motif2 Start=155 Length=23
Motif3 Start=106 Length=11
Motif4 Start=4 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay