3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03701

Details:

PFam ID : PF03701

PFam Domain Description : Uncharacterised protein family (UPF0181)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 77

Average sequence length: 49.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03701	Q32LT0_DANRE_2_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03701	C0ARE1_9ENTR_2_43	98.6

Sequence based PCA Plot of the family - PF03701 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay