3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03699

Details:

PFam ID : PF03699

PFam Domain Description : Uncharacterised protein family (UPF0182)

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 276

Average sequence length: 766.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03699	Y1810_SYNJA_3_79	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03699	Y1193_THEEB_10_889	100

Sequence based PCA Plot of the family - PF03699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=316 Length=8
Motif2 Start=27 Length=8
Motif3 Start=231 Length=8
Motif4 Start=133 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay