3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03698

Details:

PFam ID : PF03698

PFam Domain Description : Uncharacterised protein family (UPF0180)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 63

Average sequence length: 79.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03698	E1KIA5_9FIRM_4_91	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03698	E1KIA5_9FIRM_4_91	100

Sequence based PCA Plot of the family - PF03698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=3 Length=8
Motif3 Start=34 Length=8
Motif4 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay