3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03695

Details:

PFam ID : PF03695

PFam Domain Description : Uncharacterised protein family (UPF0149)

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 433

Average sequence length: 172.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03695	B5G3Q9_TAEGU_5_97	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03695	Q1ZIJ1_9GAMM_5_185	99.7

Sequence based PCA Plot of the family - PF03695 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=23 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay