3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03694

Details:

PFam ID : PF03694

PFam Domain Description : Erg28 like protein

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 104

Average sequence length: 111.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03694	B5G3Q9_TAEGU_5_97	86.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03694	Q54I19_DICDI_1_117	100

Sequence based PCA Plot of the family - PF03694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay