3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03693

Details:

PFam ID : PF03693

PFam Domain Description : Uncharacterised protein family (UPF0156)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 414

Average sequence length: 77.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03693	A8ABW1_IGNH4_3_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03693	Q07R81_RHOP5_3_88	99.2

Sequence based PCA Plot of the family - PF03693 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=16 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay