3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03692

Details:

PFam ID : PF03692

PFam Domain Description : Flagellin protein

Number of Sequence in 50% Dataset : 309

Number of Sequence in Full Dataset : 1486

Average sequence length: 96.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03692	A8ABW1_IGNH4_3_73	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03692	C5B5P8_METEA_20_93	97.3

Sequence based PCA Plot of the family - PF03692 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=37 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay