3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03690

Details:

PFam ID : PF03690

PFam Domain Description : Uncharacterised protein family (UPF0160)

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 255

Average sequence length: 291.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03690	B0XF17_CULQU_130_233	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03690	E9AMT5_LEIME_43_395	100

Sequence based PCA Plot of the family - PF03690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=266 Length=8
Motif2 Start=126 Length=8
Motif3 Start=61 Length=8
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay