3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03689

Details:

PFam ID : PF03689

PFam Domain Description : Nepovirus coat protein, N-terminal domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 34

Average sequence length: 85.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03689	A0S5Y5_GFLV_245_284	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03689	B9VMC2_GFLV_1_50	90.9

Sequence based PCA Plot of the family - PF03689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay