3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03688

Details:

PFam ID : PF03688

PFam Domain Description : Nepovirus coat protein, C-terminal domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 39

Average sequence length: 135.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03688	D0VBE9_GFLV_264_311	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03688	Q64959_9SECO_338_502	100

Sequence based PCA Plot of the family - PF03688 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=153 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay