3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03685

Details:

PFam ID : PF03685

PFam Domain Description : Uncharacterised protein family (UPF0147)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 60

Average sequence length: 82.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03685	B3T332_9ARCH_3_88	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03685	B3T332_9ARCH_3_88	100

Sequence based PCA Plot of the family - PF03685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=63 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay