3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03684

Details:

PFam ID : PF03684

PFam Domain Description : Uncharacterised protein family (UPF0179)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 71

Average sequence length: 139.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03684	B9ACK7_METSM_1_144	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03684	B9ACK7_METSM_1_144	100

Sequence based PCA Plot of the family - PF03684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=28
Motif2 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay