3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03683

Details:

PFam ID : PF03683

PFam Domain Description : Uncharacterised protein family (UPF0175)

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 258

Average sequence length: 71.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03683	Q18EG0_HALWD_42_96	30.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03683	D2RDN6_ARCPA_8_95	100

Sequence based PCA Plot of the family - PF03683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay