3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03681

Details:

PFam ID : PF03681

PFam Domain Description : Uncharacterised protein family (UPF0150)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 1146

Average sequence length: 47.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03681	Q70YJ8_9ADEN_606_853	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03681	F0NT33_LACHH_13_63	99.5

Sequence based PCA Plot of the family - PF03681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay