3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03678

Details:

PFam ID : PF03678

PFam Domain Description : Hexon, adenovirus major coat protein, C-terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 48

Average sequence length: 199.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03678	Q70YJ8_9ADEN_606_853	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03678	Q70YJ8_9ADEN_606_853	95.7

Sequence based PCA Plot of the family - PF03678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=34
Motif2 Start=82 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay