3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03676

Details:

PFam ID : PF03676

PFam Domain Description : Uncharacterised protein family (UPF0183)

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 145

Average sequence length: 231.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03676	C4QM54_SCHMA_1_301	55.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03676	B0EV56_ENTDI_159_304	100

Sequence based PCA Plot of the family - PF03676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=100 Length=8
Motif2 Start=308 Length=8
Motif3 Start=62 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay