3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03671

Details:

PFam ID : PF03671

PFam Domain Description : Ubiquitin fold modifier 1 protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 38

Average sequence length: 68.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03671	A8B2C3_GIAIC_21_96	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03671	A3FQF1_CRYPV_3_46	97.2

Sequence based PCA Plot of the family - PF03671 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay