3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03669

Details:

PFam ID : PF03669

PFam Domain Description : Uncharacterised protein family (UPF0139)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 82

Average sequence length: 95.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03669	A9PC80_POPTR_8_74	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03669	C1MZQ5_MICPC_7_107	100

Sequence based PCA Plot of the family - PF03669 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay