3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03666

Details:

PFam ID : PF03666

PFam Domain Description : Nitrogen Permease regulator of amino acid transport activity 3

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 158

Average sequence length: 251.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03666	F1L3I8_ASCSU_101_400	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03666	C5DQJ7_ZYGRC_281_784	100

Sequence based PCA Plot of the family - PF03666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay