3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03665

Details:

PFam ID : PF03665

PFam Domain Description : Uncharacterised protein family (UPF0172)

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 104

Average sequence length: 181.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03665	Q00SS4_OSTTA_3_212	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03665	E1ZPZ1_9CHLO_2_228	100

Sequence based PCA Plot of the family - PF03665 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=74 Length=8
Motif3 Start=40 Length=8
Motif4 Start=187 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay