3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03664

Details:

PFam ID : PF03664

PFam Domain Description : Glycosyl hydrolase family 62

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 98

Average sequence length: 264.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03664	C5BI63_TERTT_65_342	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03664	C5BI63_TERTT_65_342	100

Sequence based PCA Plot of the family - PF03664 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=22 Length=8
Motif3 Start=13 Length=8
Motif4 Start=66 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay