3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03663

Details:

PFam ID : PF03663

PFam Domain Description : Glycosyl hydrolase family 76

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 595

Average sequence length: 313.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03663	D8UMB9_VOLCA_21_189	94.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03663	E3B466_9SPHI_442_658	100

Sequence based PCA Plot of the family - PF03663 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=71 Length=8
Motif3 Start=159 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay