3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03662

Details:

PFam ID : PF03662

PFam Domain Description : Glycosyl hydrolase family 79, N-terminal domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 116

Average sequence length: 232.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03662	E0VVB0_PEDHC_77_300	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03662	F1RBW9_DANRE_114_253	100

Sequence based PCA Plot of the family - PF03662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=81 Length=8
Motif3 Start=1 Length=8
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay