3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03661

Details:

PFam ID : PF03661

PFam Domain Description : Uncharacterised protein family (UPF0121)

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 164

Average sequence length: 224.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03661	Q8I1X3_PLAF7_64_307	57.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03661	D3BHC8_POLPA_90_328	100

Sequence based PCA Plot of the family - PF03661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=167 Length=11
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay