3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03659

Details:

PFam ID : PF03659

PFam Domain Description : Glycosyl hydrolase family 71

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 200

Average sequence length: 325.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03659	A7EAL5_SCLS1_234_369	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03659	D7VYS6_9FLAO_78_350	100

Sequence based PCA Plot of the family - PF03659 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=67 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay