3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03653

Details:

PFam ID : PF03653

PFam Domain Description : Uncharacterised protein family (UPF0093)

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 456

Average sequence length: 141.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03653	D5V188_ARCNC_1_139	9.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03653	D3P126_AZOS1_1_151	100

Sequence based PCA Plot of the family - PF03653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=60 Length=8
Motif3 Start=45 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay