3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03652

Details:

PFam ID : PF03652

PFam Domain Description : Uncharacterised protein family (UPF0081)

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 1190

Average sequence length: 132.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03652	C4JL76_UNCRE_43_76	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03652	A8V5N7_9AQUI_1_78	100

Sequence based PCA Plot of the family - PF03652 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=149 Length=14
Motif2 Start=56 Length=11
Motif3 Start=1 Length=20
Motif4 Start=88 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay